Benchmarking Tools for the Alignment
of Functional Noncoding DNA

Pollard, Bergman, Stoye, Celniker & Eisen (2004) BMC Bioinformatics 5(1):6
Home
Figures
View the figures from the paper
Data
Download primary data
Supplement
New tools and additional analysis
Methods
Enhanced with links
People
Find people involved in this project
Figures from the paper can be viewed in .gif format and downloaded in .pdf format. Please note that Figures 3-6 have been updated since publication and correspond to Figures 1-4 in the Correction:
Figure 1: Distribution of noncoding sequence lengths in the D. melanogaster Release 3 genome sequence.

[View GIF] - [Download PDF (44 K)]
Figure 2 - Simulation statistics.

[View GIF] - [Download PDF (136 K)]
Figure 3 - Overall alignment coverage.

[View GIF] - [Download PDF (76 K)]
[Download OLD PDF (152 K)]
Figure 4 - Overall alignment sensitivity.

[View GIF] - [Download PDF (80 K)]
[Download OLD PDF (180 K)]
Figure 5 - Constraint coverage and sensitivity.

[View GIF] - [Download PDF (76 K)]
[Download OLD PDF (172 K)]
Figure 6 - Constraint specificity and local constraint sensitivity.

[View GIF] - [Download PDF (80 K)]
[Download OLD PDF (168 K)]
This page was last updated on April 28th, 2004
Problems with the website? Please contact dpollard@socrates.berkeley.edu.