We are looking for two postdoctoral fellows to work on computational analysis of the evolution of gene regulation in Drosophila. Click here for more info
Recent Papers
Discordance of gene and species trees in Drosophila
Large-scale turnover of functional transcription-factor binding sites in Drosophila

I have decided to release source code of ScanAlyze, Cluster and TreeView to the academic/non-profit community.

Information: I write all of my code in Borland C++ Builder for Windows produced by Inprise (www.inprise.com) and have not ported these programs to other compilers or operating systems (I am working on a new program with the functionality of Cluster and TreeView that will be platform independent). The code is available here in two zip files (one for ScanAlyze and one for Cluster/TreeView). These should be extracted at the root level on the drive where C++ Builder is installed. These zip file contains my working versions of the software. I warn all in advance that it is not well commented. Please let me know of any bugs. I would love to incorporate any modifications/improvements into subsequent versions. Please also note that because of complications with the Numerical Recipes License, the code is not ready to compile. You must obtain the code for certain NR routines and insert them into the appropriate file (Recipes_Dist.cpp or NumericalRecipes_Dist.cpp). A list of necessary routines is included in these files. Visit the Numerical Recipes site for licensing details.

Conditions of Use: All downloads and use of the code are subject to the following terms: Software and source code Copyright (C) 1998-2000 Stanford University Written by Michael Eisen (eisen@genome.stanford.edu) This software is copyright under the following conditions: Permission to use, copy, and modify this software and its documentation is hereby granted to all academic and not-for-profit institutions without fee, provided that the above copyright notice and this permission notice appear in all copies of the software and related documentation. Permission to distribute the software or modified or extended versions thereof on a not-for-profit basis is explicitly granted, under the above conditions. However, the right to use this software by companies or other for profit organizations, or in conjunction with for profit activities, and the right to distribute the software or modified or extended versions thereof for profit are NOT granted except by prior arrangement and written consent of the copyright holders. For these purposes, downloads of the source code constitute "use" and downloads of this source code by for profit organizations and/or distribution to for profit institutions in explicitly prohibited without the prior consent of the copyright holders. Use of this source code constitutes an agreement not to criticize, in any way, the code-writing style of the author, including any statements regarding the extent of documentation and comments present. The software is provided "AS-IS" and without warranty of ank kind, express, implied or otherwise, including without limitation, any warranty of merchantability or fitness for a particular purpose. In no event shall Stanford University or the authors be liable for any special, incudental, indirect or consequential damages of any kind, or any damages whatsoever resulting from loss of use, data or profits, whether or not advised of the possibility of damage, and on any theory of liability, arising out of or in connection with the use or performance of this software. This code was written using Borland C++ Builder (Inprise Inc., www.inprise.com) and may be subject to certain additional restrictions as a result.

To download follow the appropriate link below (note that you must be resistered to download source code):

I AGREE TO AND SATISFY THE ABOVE CONDITIONS AND WISH TO DOWNLOAD SOURCE CODE FOR SCANALYZE

I AGREE TO AND SATISFY THE ABOVE CONDITIONS AND WISH TO DOWNLOAD SOURCE CODE FOR CLUSTER/TREEVIEW

I DO NOT AGREE