Factor
bcd
| Flybase ID: | [FBgn0000166] |
| Gadfly ID: | [CG1034] |
| Factor Type: | homeobox |
| Comment: | bicoid |
Experimentally verified sequences
| Sequence | Target gene | Accession | cis-regulatory element | Site num | Experimental evidence | Reference | |||
|---|---|---|---|---|---|---|---|---|---|
 |
catccgCTAAGCTCccg |
hb | AE003680 | X2 | DNAse protection | Driever W, Thoma G, Nusslein-Volhard C (1989)
Nature [citation] |
[flybase] | [pubmed] | |
|
tcgctgCTAAGCTGgcc |
hb | AE003680 | X1 | DNAse protection | ||||
|
gatttggATGATCCGgg |
hb | AE003680 | X3 | DNAse protection | ||||
|
gtcataatcacctTTAATCCCaagtact |
hb | AE003680 | B2 | DNAse protection | ||||
|
ttctgctCTAATCCAgaatgg |
hb | AE003680 | A2 | DNAse protection | ||||
|
ccaacGTAATCCCcata |
hb | AE003680 | A1 | DNAse protection | ||||
|
cccatCTAATCCCttgacgc |
hb | AE003680 | A3 | DNAse protection | ||||
|
catgCTAATCTGatgactga |
hb | AE003680 | B1 | DNAse protection | ||||
|
ctgaacTAAATCCGgctt |
kr | AE003466 | 730 | 6 | DNAse protection | Hoch M, Seifert E, Jackle H (1991) EMBO
J. [citation] |
[flybase] | [pubmed] |
|
aaatTTAATCCGtttct |
kr | AE003466 | 730 | 1 | DNAse protection | |||
|
gacaaATAATCCAgcct |
kr | AE003466 | 730 | 2 | DNAse protection | |||
|
gtctgTTAATCTCcggc |
kr | AE003466 | 730 | 5 | DNAse protection | |||
|
catggtgaTTAAGCTT |
kr | AE003466 | 730 | 3 | DNAse protection | |||
|
ttcctTAAATCCGtctg |
kr | AE003466 | 730 | 4 | DNAse protection | |||
|
gcccCTAATCCCttcgaca |
eve | AE003831 | s2e | 1 | DNAse protection | Small S, et. al. (1991) Genes
Dev. [citation] |
[flybase] | [pubmed] |
|
cttggCTAATCCCagca |
eve | AE003831 | s2e | 2 | DNAse protection | |||
|
gactaATAATCTCgctg |
eve | AE003831 | s2e | 4 | DNAse protection | |||
|
ccgtgTTAATCCGtttg |
eve | AE003831 | s2e | 5 | DNAse protection | |||
|
ggactATAATCGCacaa |
eve | AE003831 | s2e | 3 | DNAse protection | |||
|
attcctcgacTTAAGCTCgccgc |
tll | AE003775 | 7 | DNAse protection | Liaw GJ, Lengyel JA (1993) Mech.
Dev. [citation] |
[flybase] | [pubmed] | |
|
actttaaaATAATTTTatttatt |
tll | AE003775 | 3 | DNAse protection | ||||
|
ctaaaatccGTAATCTGcttaag |
tll | AE003775 | 8 | DNAse protection | ||||
|
aaataaaaaaCAAATATTtgcatttctt |
tll | AE003775 | 1 | DNAse protection | ||||
|
cagtgcctCTAATCTCgcttggtc |
tll | AE003775 | 6 | DNAse protection | ||||
|
ggcaacgcCTAATCTGgctcagc |
tll | AE003775 | 4 | DNAse protection | ||||
|
ctTGAATCCTaaaggctctcaa |
tll | AE003775 | 5 | DNAse protection | ||||
|
aaacgcaatCTGAGCTCcg |
tll | AE003775 | 2a | DNAse protection | ||||
|
gttacCTAATCGCgg |
kni | AE003592 | 64 | 3 | DNAse protection | Rivera-Pomar R, et. al. (1995)
Nature [citation] |
[flybase] | [pubmed] |
|
ctaggATAATCTGcag |
kni | AE003592 | 64 | 6 | DNAse protection | |||
|
ggtacCTAAGCCAgc |
kni | AE003592 | 64 | 1 | DNAse protection | |||
|
cttacCTAAGCTGcag |
kni | AE003592 | 64 | 5 | DNAse protection | |||
|
taacGAAATCGCtgg |
kni | AE003592 | 64 | 2 | DNAse protection | |||
|
GTAAGCTGatcccgcg |
kni | AE003592 | 64 | 4 | DNAse protection | |||
|
caatccTCAATCCGcgatccgt |
hb | AE003680 | x | DNAse protection | Ma X, et. al. (1996) Development [citation] |
[flybase] | [pubmed] | |
|
tggctgCAAATCCGacg |
spalt | AE003632 | 4 | DNAse protection | Kuhnlein RP, et. al. (1997) Mech.
Dev. [citation] |
[flybase] | [pubmed] | |
|
ccacggaCAAATCCTttggcc |
spalt | AE003632 | 3 | DNAse protection | ||||
|
tggctgCAAATCCGacg |
spalt | AE003632 | 5 | DNAse protection | ||||
|
gaattATAATCCCttcgatcg |
spalt | AE003632 | 7 | DNAse protection | ||||
|
tactaaTTAAGCATggctcaa |
spalt | AE003632 | 6 | DNAse protection | ||||
|
tcttcgATAAGCCGgaggaa |
spalt | AE003632 | 2 | DNAse protection | ||||
|
ttGCAAGCCGtttttcaggggcg |
spalt | AE003632 | 1 | DNAse protection | ||||
|
TAAAGTTGatcattagt |
h | AE003554 | s7e | 3 | DNAse protection | La Rosee A, et. al. (1997) EMBO
J. [citation] |
[flybase] | [pubmed] |
|
cttgaCAAATCGCcgtg |
h | AE003554 | s7e | 5 | DNAse protection | |||
|
agcaaacgtTAAAGTTG |
h | AE003554 | s7e | 4 | DNAse protection | |||
|
atcttTTAATCTTgata |
h | AE003554 | s7e | 2 | DNAse protection | |||
|
accagTCAATCTGgact |
h | AE003554 | s7e | 1 | DNAse protection | |||
|
tctacTTAAGCCGaaaa |
h | AE003554 | s7e | 6 | DNAse protection | |||
|
aagcaagaCTAATTTTt |
h | AE003554 | s7e | 7 | DNAse protection | |||
|
gttttTTAAGCCTtttgc |
h | AE003554 | s6e | 2 | DNAse protection | Hader T, et. al. (1998) Mech.
Dev. [citation] |
[flybase] | [pubmed] |
|
caAAAAGTCAaatgc |
h | AE003554 | s6e | 3 | DNAse protection | |||
|
ttttTTAAGCCTttc |
h | AE003554 | s6e | 1 | DNAse protection |
Alignment
t t a a g c t c
a t a a t t t t
g t a a t c t g
c a a a t a t t
c a a a t c c g
c t a a t c t c
c t a a t c t g
c a a a t c c t
c a a a t c c g
a t a a t c c c
t t a a g c a t
a t a a g c c g
t a a a t c c g
g c a a g c c g
t t a a t c c g
a t a a t c c a
t t a a t c t c
t t a a g c t t
t a a a t c c g
c t a a t c g c
a t a a t c t g
c t a a g c c a
c t a a g c t c
c t a a g c t g
g a a a t c g c
g t a a g c t g
c t a a g c t g
a t g a t c c g
t t a a t c c c
c t a a t c c a
g t a a t c c c
t c a a t c c g
c t a a t c c c
c t a a t c t g
t a a a g t t g
c a a a t c g c
t a a a g t t g
t g a a t c c t
t t a a t c t t
t c a a t c t g
t t a a g c c g
c t a a t t t t
t t a a g c c t
a a a a g t c a
c t a a t c c c
t t a a g c c t
c t a a t c c c
a t a a t c t c
c t g a g c t c
t t a a t c c g
a t a a t c g c
A| 9 11 49 51 0 1 1 4
C| 19 3 0 0 0 45 25 16
T| 18 36 0 0 34 5 21 10
G| 5 1 2 0 17 0 4 21
|
