Factor
cad
| Flybase ID: | [FBgn0000251] |
| Gadfly ID: | [CG1759] |
| Factor Type: | homeobox |
Experimentally verified sequences
| Sequence | Target gene | Accession | cis-regulatory element | Site num | Experimental evidence | Reference | |||
|---|---|---|---|---|---|---|---|---|---|
 |
AACCATAAAC |
ftz | zebra stripe | DNase protection | Topol J, et. al. (1991) Genes
Dev. [citation] |
[flybase] | [pubmed] | ||
|
AGACATAAAA |
ftz | zebra stripe | DNase protection | |||||
|
AATCATAAAG |
ftz | zebra stripe | DNase protection | |||||
|
TTCCCTAAAA |
ftz | zebra stripe | DNase protection | |||||
|
-TAACGAAATcg |
kni | kni223 | DNase protection | Rivera-Pomar R, et. al. (1995)
Nature [citation] |
[flybase] | [pubmed] | ||
|
-GTCATAAAGtc |
kni | kni223 | DNase protection | |||||
|
-GGCCTAAAAaa |
kni | kni223 | DNase protection | |||||
|
-CGTGCAAACgt |
kni | kni223 | DNase protection | |||||
|
-ACCATAAATtg |
kni | kni223 | DNase protection | |||||
|
-GAGCCAAACaa |
kni | kni223 | DNase protection | |||||
|
GTGCATAAAT |
en | intron | DNase protection | Florence, et. al. (1997)
Development [citation] |
[flybase] | [pubmed] | ||
|
TCACATAAAG |
en | intron | DNase protection | |||||
|
GGCCATAAAA |
en | intron | DNase protection | |||||
|
--TAATAAATtcc |
h | h6s | 10 | DNase protection | Hader T, et. al. (1998) Mech.
Dev. [citation] |
[flybase] | [pubmed] | |
|
--TTTTAAAAaat |
h | h6s | 8 | DNase protection | ||||
|
tgcCAAAATAAAGat |
h | h6s | 9.22 | DNase protection | ||||
|
--TTGTAAAAccc |
h | h6s | 6 | DNase protection | ||||
|
--TGCCAAAAtaaagat |
h | h6s | 9.21 | DNase protection | ||||
|
--TTCTAAAAaaa |
h | h6s | 9.1 | DNase protection | ||||
|
--TGGTAAAAaga |
h | h6s | 7.2 | DNase protection | ||||
|
--CAATAAAGtct |
h | h6s | 7.1 | DNase protection | ||||
|
--GCTTAAAAaaa |
h | h6s | 3 | DNase protection | ||||
|
--CCCGAAAGagt |
h | h6s | 5 | DNase protection | ||||
|
--TTACAAAGacg |
h | h6s | 17 | DNase protection | ||||
|
--GTTCAAATcag |
h | h6s | 4 | DNase protection | ||||
|
--TCGTAAAAccc |
h | h6s | 2 | DNase protection | ||||
|
--CCATAAAAaa |
h | h6s | 15 | DNase protection | ||||
|
--TCGCAAAAaaa |
h | h6s | 15 | DNase protection | ||||
|
--ACTTAAAAacatagtttc |
h | h6s | 14.1 | DNase protection | ||||
|
--GCTTAAAAac |
h | h6s | 12 | DNase protection | ||||
|
--AGATAAAGaag |
h | h6s | 13 | DNase protection | ||||
|
aatcaaaaaATGTGGAAATtcc |
h | h6s | 11.2 | DNase protection | ||||
|
--AATCAAAAaatgtggaaattcc |
h | h6s | 11.1 | DNase protection | ||||
|
--TCGTAAAAaac |
h | h6s | 1 | DNase protection |
Alignment
- T A A C G A A A T
- G T C A T A A A G
- G G C C T A A A A
- C G T G C A A A C
- A C C A T A A A T
- G A G C C A A A C
- - T A A T A A A T
- - T T T T A A A A
C A A A A T A A A G
- - T T G T A A A A
- - T G C C A A A A
- - T T C T A A A A
- - T G G T A A A A
- - C A A T A A A G
- - G C T T A A A A
- - C C C G A A A G
- - T T A C A A A G
- - G T T C A A A T
- - T C G T A A A A
- - C C A T A A A A
- - T C G C A A A A
- - A C T T A A A A
- - G C T T A A A A
- - A G A T A A A G
A T G T G G A A A T
- - A A T C A A A A
- - T C G T A A A A
A A C C A T A A A C
A G A C A T A A A A
A A T C A T A A A G
T T C C C T A A A A
G T G C A T A A A T
T C A C A T A A A G
G G C C A T A A A A
A| 4 4 8 5 14 0 34 34 34 17
C| 1 2 7 18 7 7 0 0 0 3
T| 2 4 12 7 6 24 0 0 0 6
G| 2 5 7 4 7 3 0 0 0 8
|
