Factor
hb
| Flybase ID: | [FBgn0001180] |
| Gadfly ID: | [CG9786] |
| Factor Type: | Zinc Finger (C2H2) |
| Comment: | gap gene |
Experimentally verified sequences
| Sequence | Target gene | Accession | cis-regulatory element | Site num | Experimental evidence | Reference | |||
|---|---|---|---|---|---|---|---|---|---|
 |
tgggttATTTTTTTGCGc |
eve | AE003831 | s2e | 2 | DNAse protection | Stanojevic D, Hoey T, Levine M (1989)
Nature [citation] |
[pubmed] | |
|
tatgtGTTTTTATGACtt |
eve | AE003831 | s2e | 3 | DNAse protection | |||
|
cccacgaTTTTTTTGGCC |
eve | AE003831 | s2e | 1 | DNAse protection | |||
|
tgctCTCTTTACGGTtta |
eve | AE003831 | s3e | 14c | DNAse protection | |||
|
cccaATTTTTAGTGGaaa |
eve | AE003831 | s3e | 16 | DNAse protection | |||
|
cagATTTTTATGGGtcc |
eve | AE003831 | s3e | 12 | DNAse protection | |||
|
tcagTTTTTTGTTTTggc |
eve | AE003831 | s3e | 14a | DNAse protection | |||
|
ctcGTTTTTAAGATccg |
eve | AE003831 | s3e | 9 | DNAse protection | |||
|
gcgcCTTTTTATTGGtgc |
eve | AE003831 | s3e | 15 | DNAse protection | |||
|
accgATTTTTGTGCCcgg |
eve | AE003831 | s3e | 14b | DNAse protection | |||
|
cgcGTTTTTAATGCttac |
eve | AE003831 | s3e | 6 | DNAse protection | |||
|
ctagtTTTTTTCCCCGaac |
eve | AE003831 | s3e | 11c | DNAse protection | |||
|
cagcTTCTTTGTTCCggg |
eve | AE003831 | s3e | 13 | DNAse protection | |||
|
cacgTTTTTTGTTCCcat |
eve | AE003831 | s3e | 11a | DNAse protection | |||
|
gcgCTTTTTTCGCTgcg |
eve | AE003831 | s3e | 11b | DNAse protection | |||
|
ctaaTTTTTTAATTCttca |
eve | AE003831 | s3e | 10 | DNAse protection | |||
|
tcacGTTTTTACGAGctc |
eve | AE003831 | s3e | 8 | DNAse protection | |||
|
atatatagTTGTTTAATTAtaatt |
hb | AE003680 | p1 | 3 | DNAse protection | Treisman J, Desplan C (1989)
Nature [citation] |
[pubmed] | |
|
CTTTTTCCCGTtttgcgtttttaa |
hb | AE003680 | p1 | 2 | DNAse protection | |||
|
gcgcataaTTTTTTGTTTCtgctc |
hb | AE003680 | p1 | 1 | DNAse protection | |||
|
tattccacCTTTTTAAGCTaattt |
hb | AE003680 | p2 | 6 | DNAse protection | |||
|
tagaccaATTTTTTTCCCaagcgg |
hb | AE003680 | p2 | 7 | DNAse protection | |||
|
ctttgccgTTTTTTGGCATctccg |
hb | AE003680 | p2 | 4 | DNAse protection | |||
|
gccaattgTTTTTTGGGCAacttt |
hb | AE003680 | p2 | 5 | DNAse protection | |||
|
atagtttttTTTTTTAGTCCaaaa |
hb | AE003680 | p2 | 8 | DNAse protection | |||
|
gtgcgaATTTTTAAGCGgaaa |
ubx | AE003714 | PBX | 5 | DNAse protection | Zhang CC, et. al. (1991)
Development [citation] |
[flybase] | [pubmed] |
|
aacacacaTTTTTTATGGCgcatt |
ubx | AE003714 | PBX | 6 | DNAse protection | |||
|
tgctaaatcATTTTTAAGGGaaaa |
ubx | AE003714 | PBX | 1 | DNAse protection | |||
|
aatcataaTTTTTTGCCATggct |
ubx | AE003714 | PBX | 2 | DNAse protection | |||
|
cgaaggcaccTTTTTTAATGGccgac |
ubx | AE003714 | PBX | 4 | DNAse protection | |||
|
atttggTTTTTTACCAAcagcct |
ubx | AE003714 | PBX | 7 | DNAse protection | |||
|
ttggacgcagTTTTTTATTAGcca |
ubx | AE003714 | PBX | 3 | DNAse protection | |||
|
tgtaCTTTTTATGACctc |
ubx | AE003714 | BRE | C1 | DNAse protection | Qian S, Capovilla M, Pirrotta V (1991) EMBO
J. [citation] |
[flybase] | [pubmed] |
|
gcagtTTTTTTACGAGgt |
ubx | AE003714 | BRE | C2 | DNAse protection | |||
|
acgaTTTTTTAATGTttc |
ubx | AE003714 | BRE | B | DNAse protection | |||
|
accgTTTTTTATGTGtgc |
ubx | AE003714 | BRE | A | DNAse protection | |||
|
ttaaaTTTTTTCAGACaaa |
kr | AE003466 | 730 | 4 | DNAse protection | Hoch M, Seifert E, Jackle H (1991) EMBO
J. [citation] |
[flybase] | [pubmed] |
|
acatCTTTTTTGCATtgt |
kr | AE003466 | 730 | 10 | DNAse protection | |||
|
atttatatTTTTTTGCTTTt |
kr | AE003466 | 730 | 2 | DNAse protection | |||
|
acactttttCTTTTTCTGATc |
kr | AE003466 | 730 | 3 | DNAse protection | |||
|
aattgCTTTTTATGATcatgc |
kr | AE003466 | 730 | 1 | DNAse protection | |||
|
gcattGTTTTTACTTTgac |
kr | AE003466 | 730 | 9 | DNAse protection | |||
|
gttGTTTTTAAGAGaa |
kr | AE003466 | 730 | 7 | DNAse protection | |||
|
cgacgcGTTTTTTCGCGact |
kr | AE003466 | 730 | 5 | DNAse protection | |||
|
tgcattgtTTTTTTTTCAGtttc |
kr | AE003466 | 730 | 6 | DNAse protection | |||
|
ttgacaTTTTTTGTTGTt |
kr | AE003466 | 730 | 8 | DNAse protection | |||
|
taatTTATTTATTTGccca |
en | AE003825 | 1 | DNAse protection | Zuo P., et. al. (1991) Genes
Dev. [citation] |
[pubmed] | ||
|
ctgTTTTTCAAGGCaca |
en | AE003825 | 1 | DNAse protection | ||||
|
tgcgTTTTTTCCCGTt |
kni | AE003592 | NruEco | 6 | DNAse protection | Pankratz MJ, et. al. (1992)
Science [citation] |
[flybase] | [pubmed] |
|
tgacTTTTTTACAAGc |
kni | AE003592 | NruEco | 5 | DNAse protection | |||
|
agtcTTTTTTATGGTg |
kni | AE003592 | NruEco | 4 | DNAse protection | |||
|
ttaagTTTTTTGCCGC |
kni | AE003592 | PstNru | 2 | DNAse protection | |||
|
gttTTTTTTATTATtt |
kni | AE003592 | PstNru | 1 | DNAse protection | |||
|
aatatGTTTTTATGAGagg |
h | AE003554 | s3/4e | 4 | DNAse protection | Hartmann C, et. al. (1994) Mech.
Dev. [citation] |
[flybase] | [pubmed] |
|
ataaaTTTTTTTTCCCcta |
h | AE003554 | s3/4e | 5 | DNAse protection | |||
|
tcgtcCTTTTTATGTTgtc |
h | AE003554 | s3/4e | 3 | DNAse protection | |||
|
catttTTTTTTCTTCCttc |
h | AE003554 | s3/4e | 1 | DNAse protection | |||
|
cgagATTTTTGCGTAatt |
h | AE003554 | s3/4e | 2 | DNAse protection | |||
|
gttccATTTTTAGCGGaac |
h | AE003554 | s3/4e | 6 | DNAse protection | |||
|
cgcagATTTTTAGTGCgaa |
h | AE003554 | s3/4e | 9 | DNAse protection | |||
|
ctctcTTTTTTGTTTGttc |
h | AE003554 | s3/4e | 8 | DNAse protection | |||
|
taattaTTTTTTATGAGttc |
h | AE003554 | s3/4e | 11 | DNAse protection | |||
|
ttttcTTTTTTGTGGTtag |
h | AE003554 | s3/4e | 15 | DNAse protection | |||
|
tcatcTTTTTTGTCACgtg |
h | AE003554 | s3/4e | 7 | DNAse protection | |||
|
tcccaTTTTTTGTTCTaat |
h | AE003554 | s3/4e | 10 | DNAse protection | |||
|
gctgttCTTTTTGGCCCtg |
h | AE003554 | s3/4e | 14 | DNAse protection | |||
|
catgaTTTTTTATTTGccc |
h | AE003554 | s3/4e | 13 | DNAse protection | |||
|
ttgcaATTTTTGTGGTttt |
h | AE003554 | s3/4e | 17 | DNAse protection | |||
|
cgcacTTCTTTGTGGCcag |
h | AE003554 | s3/4e | 12 | DNAse protection | |||
|
acccaATTTTTAGCTAata |
h | AE003554 | s3/4e | 16 | DNAse protection | |||
|
ggctgagTTTTTTAGGCCaattct |
kni | AE003592 | 223 | 1 | DNAse protection | Rivera-Pomar R, et. al. (1995)
Nature [citation] |
[flybase] | [pubmed] |
|
ctgcgTTTTTTGTAAC |
kni | AE003592 | NruEco | 3 | DNAse protection | |||
|
tccgcaaTTTTTTAAGCGgaaa |
kni | AE003592 | 223 | 2 | DNAse protection | Rivera-Pomar R, et. al. (1995)
Nature [citation] |
[flybase] | [pubmed] |
|
ttgcaagccGTTTTTCAGGGgcg |
spalt | AE003632 | 1 | DNAse protection | Kuhnlein RP, et. al. (1997) Mech.
Dev. [citation] |
[flybase] | [pubmed] | |
|
ttgtgTTTTTTCTGCTtt |
h | AE003554 | s7e | 6 | DNAse protection | La Rosee A, et. al. (1997) EMBO
J. [citation] |
[flybase] | [pubmed] |
|
tttttTTTTTTTTGATtc |
h | AE003554 | s7e | 4 | DNAse protection | |||
|
ggcaaCTTTTTGGGAAtt |
h | AE003554 | s7e | 5 | DNAse protection | |||
|
tctacTTTTTTATTGGcc |
h | AE003554 | s7e | 8 | DNAse protection | |||
|
taatcTTTTTTATTAAat |
h | AE003554 | s7e | 3 | DNAse protection | |||
|
gtgcgTTTTTTGTGCCca |
h | AE003554 | s7e | 7 | DNAse protection | |||
|
cctccgtccgTTTTTTAAGCCtttctg |
h | AE003554 | s6e | 2 | DNAse protection | Hader T, et. al. (1998) Mech.
Dev. [citation] |
[flybase] | [pubmed] |
|
gtttttttTTTTTTGTTTTttttagaagtg |
h | AE003554 | s6e | 4 | DNAse protection | |||
|
cgcaaaacccTTTTTTGTCTTgt |
h | AE003554 | s6e | 8 | DNAse protection | |||
|
tcaaatgcgaTTTTTTATGGGaa |
h | AE003554 | s6e | 7 | DNAse protection | |||
|
aacaataaaGTTTTTGACCAgattccgg |
h | AE003554 | s6e | 3 | DNAse protection | |||
|
gggctgTTTTTTAAGCC |
h | AE003554 | s6e | 5 | DNAse protection | |||
|
ggatcgcagTTTTTTACGATcctca |
h | AE003554 | s6e | 1 | DNAse protection | |||
|
gacatcTTCTTTATCTAt |
h | AE003554 | s6e | 6 | DNAse protection | |||
|
tTTGTTTCTTATttttagca |
abd-b | AE003715 | iab-2 | 5 | DNAse protection | Shimell MJ, et. al. (2000) Dev.
Biol. [citation] |
[flybase] | [pubmed] |
|
gtttccgctgcaTTTTTTATGAGactg |
abd-b | AE003715 | iab-2 | 1 | DNAse protection | |||
|
tcaacggcaaTTTTTTATGGTttgca |
abd-b | AE003715 | iab-2 | 3 | DNAse protection | |||
|
attgtcccTTTTTTATTTTgtctgct |
abd-b | AE003715 | iab-2 | 2 | DNAse protection | |||
|
cgaaTTTTTTGCGCGac |
abd-b | AE003715 | iab-2 | 4 | DNAse protection |
Alignment
t t g t t t c t t a t
a t t t t t a a g c g
a t t t t t t t g c g
t t t t t t a t g g c
a t t t t t a a g g g
t t t t t t g c c a t
t t t t t t a a t g g
t t t t t t a c c a a
c t t t t t a t g a c
t t t t t t a c g a g
g t t t t t c a g g g
t t t t t t c a g a c
t t t t t t a a t g t
c t t t t t t g c a t
t t t t t t g c t t t
t t t t t t a t g t g
c t t t t t c t g a t
c t t t t t a t g a t
g t t t t t a c t t t
g t t t t t a a g a g
g t t t t t t c g c g
t t t t t t t t c a g
t t t t t t g c c g c
t t t t t t c c c g t
t t t t t t a c a a g
t t t t t t a t g g t
t t t t t t g t a a c
t t t t t t a a g c g
t t t t t t g t t g t
t t t t t t a g g c c
c t t t t t a a g c t
t t t t t t a t t a t
a t t t t t t t c c c
t t t t t t g g c a t
t t t t t t g g g c a
t t g t t t a a t t a
t t t t t t a g t c c
c t t t t t c c c g t
t t t t t t g t t t c
t t t t t t c t g c t
t t t t t t t t g a t
c t t t t t g g g a a
t t t t t t a t t g g
t t t t t t a t t a a
t t t t t t g t g c c
t t t t t t a a g c c
t t t t t t g t t t t
t t t t t t g t c t t
t t t t t t a t g g g
g t t t t t g a c c a
t t t t t t a a g c c
g t t t t t a t g a g
t t t t t t a c g a t
t t t t t t t t c c c
c t t t t t a t g t t
t t t t t t c t t c c
a t t t t t g c g t a
t t c t t t a t c t a
a t t t t t a g c g g
a t t t t t a g t g c
t t t t t t g t t t g
t t t t t t a t g a g
t t t t t t g t g g t
t t t t t t g t c a c
t t t t t t g t t c t
c t t t t t g g c c c
t t t t t t a t t t g
a t t t t t g t g g t
c t c t t t a c g g t
t t c t t t g t g g c
a t t t t t a g t g g
a t t t t t a t g g g
t t t t t t g t t t t
a t t t t t a g c t a
g t t t t t a a g a t
c t t t t t a t t g g
a t t t t t g t g c c
g t t t t t a a t g c
t t t t t t c c c c g
t t c t t t g t t c c
t t t t t t g t t c c
c t t t t t t c g c t
t t t t t t a a t t c
g t t t t t a c g a g
t t a t t t a t t t g
g t t t t t a t g a c
t t t t t t t g g c c
t t t t t c a a g g c
t t t t t t a t t a g
t t t t t t a t g a g
t t t t t t a t g g t
t t t t t t a t t t t
t t t t t t g c g c g
A| 12 0 1 0 0 0 49 17 2 27 9
C| 12 0 4 0 0 1 9 17 18 25 26
T| 59 93 86 93 93 92 9 47 28 17 30
G| 10 0 2 0 0 0 26 12 45 24 28
|
