Factor
Kr
| Flybase ID: | [FBgn0001325] |
| Gadfly ID: | [CG3340] |
| Factor Type: | Zinc Finger (C2H2) |
| Comment: | gap gene |
Experimentally verified sequences
| Sequence | Target gene | Accession | cis-regulatory element | Site num | Experimental evidence | Reference | |||
|---|---|---|---|---|---|---|---|---|---|
 |
tagcggcatAAAAGGGTTAaacaggtagc |
kni | AE003592 | K1 | DNAse protection | Pankratz MJ, Hoch M, Seifert E, Jackle H (1989)
Nature [citation] |
[flybase] | [pubmed] | |
|
gcgcgcccatAAAAGGGTTAagcaca |
kni | AE003592 | K2 | DNAse protection | ||||
|
gaAAAAGGGGCAtttacgga |
hb | AE003680 | p2 | 2 | DNAse protection | Treisman J, Desplan C (1989) Nature [citation] |
[pubmed] | |
|
gcgAACTGGGTTAttttt |
eve | AE003831 | s2e | 2 | DNAse protection | Stanojevic D, Hoey T, Levine M (1989)
Nature [citation] |
[pubmed] | |
|
aatTATTGGGTTAtattg |
eve | AE003831 | s2e | 6 | DNAse protection | |||
|
tgtcGAAGGGATTAggggc |
eve | AE003831 | s2e | 3 | DNAse protection | |||
|
ctcaAAACGGGTTAagctc |
eve | AE003831 | s2e | 1 | DNAse protection | |||
|
cgaGACCGGGTTGcgaag |
eve | AE003831 | s2e | 4 | DNAse protection | |||
|
ggcAAACGGATTAacacg |
eve | AE003831 | s2e | 5 | DNAse protection | |||
|
attTAACTGGTTAattga |
en | AE003825 | 1 | DNAse protection | Zuo P., et. al. (1991) Genes
Dev. [citation] |
[pubmed] | ||
|
tgcAAAAGGGTCAcggat |
ubx | AE003714 | PBX | 1 | DNAse protection | Zhang CC, et. al. (1991)
Development [citation] |
[flybase] | [pubmed] |
|
gtttCCACGGATTAgacc |
h | AE003554 | s5e | 2 | DNAse protection | Langeland JA, et. al. (1994)
Development [citation] |
[flybase] | [pubmed] |
|
cctCAACGGGTTTtacga |
h | AE003554 | s6e | 1 | DNAse protection | |||
|
gcaGAAAGGCTTAaaaaa |
h | AE003554 | s6e | 2 | DNAse protection | |||
|
actGAACGGGTCAgagga |
h | AE003554 | s6e | 3 | DNAse protection | |||
|
caaAAAAGGGTTTtgcgg |
h | AE003554 | s6e | 7 | DNAse protection | |||
|
ggcAAAAGGCTTAaaaaa |
h | AE003554 | s6e | 5 | DNAse protection | |||
|
gcgtGAAAGGGTGAagcta |
abd-b | AE003715 | iab-2 | 1 | DNAse protection | Shimell MJ, et. al. (1994)
Science [citation] |
[flybase] | [pubmed] |
|
acaataaatattcataAAAAGAGTTAagtgcc |
kni | AE003592 | 2 | DNAse protection | Rivera-Pomar R, et. al. (1995)
Nature [citation] |
[flybase] | [pubmed] | |
|
agttgacttttAAAAGGGTTAcaatt |
kni | AE003592 | 3 | DNAse protection | ||||
|
gcgcattgtaccAAAAGGGTTGttcagac |
kni | AE003592 | 1 | DNAse protection | ||||
|
acgcAAAAGGATGGcacaaatttcacgc |
spalt | AE003632 | 2 | DNAse protection | Kuhnlein RP, et. al. (1997) Mech.
Dev. [citation] |
[flybase] | [pubmed] | |
|
ccgatcGAAGGGATTAtaatt |
spalt | AE003632 | 4 | DNAse protection | ||||
|
ggacaaatcctttggccaacAAAAGGGTAAtggctgcaaa |
spalt | AE003632 | 3 | DNAse protection | ||||
|
tcggttaagcaaaggagtgtcatagAAATGGGTGAaattctgttc |
spalt | AE003632 | 1 | DNAse protection | ||||
|
tggCAAAGGGTTTcgccc |
h | AE003554 | s7e | 4 | DNAse protection | La Rosee-Borggreve A, et. al. (1999)
Mech. Dev. [citation] |
[flybase] | [pubmed] |
|
tcaAGCTGAGTTAaaact |
h | AE003554 | s7e | 2 | DNAse protection | |||
|
cacCAAAGGGTTCgtgag |
h | AE003554 | s7e | 5 | DNAse protection | |||
|
gtaGAAGGAGTGAcactc |
h | AE003554 | s7e | 1 | DNAse protection |
Alignment
a a a a g g a t g g
a a a a g a g t t a
a a a a g g g t t a
a a a a g g g t t a
g a a g g g a t t a
a a a a g g g t t g
a a a a g g g t t a
c a a a g g g t t t
a g c t g a g t t a
a a a a g g g g c a
c a a a g g g t t c
c a a c g g g t t t
g a a a g g c t t a
g a a g g a g t g a
g a a c g g g t c a
a a a a g g g t t t
a a a a g g c t t a
c c a c g g a t t a
a a c t g g g t t a
t a t t g g g t t a
g a a g g g a t t a
a a a c g g g t t a
g a a a g g g t g a
a a a a g g g t a a
g a c c g g g t t g
a a a c g g a t t a
t a a c t g g t t a
a a a t g g g t g a
a a a a g g g t c a
A| 16 27 25 15 0 3 5 0 1 22
C| 4 1 3 7 0 0 2 0 3 1
T| 2 0 1 4 1 0 0 28 21 3
G| 7 1 0 3 28 26 22 1 4 3
|
