MONKEY

MONKEY is a set of programs designed to search alignments of non-coding DNA sequence for matches to matrices representing the sequence specificity of transcription factors.

download the latest release

download the documentation

release notes

8/8/06 - release 2.0, now includes rmonkey 

4/4/06 - doc file updated

new! rMONKEY is now published: Moses et al. PLoS comput Biol. 2006 Oct 13;2(10)

note that there are some problems with this manuscript:
1) Formatting of table 1 is wrong so find these number in the text
2) the links to the supplementary data files on the PLoS website are reversed

Check out the original MONKEY paper: Moses et. al. Genome Biol. 2004;5(12):R98

view supplementary figures